PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G04980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 433aa    MW: 42818.3 Da    PI: 5.2476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G04980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09223266755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + E  RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  LPERR06G04980.1 223 MTESLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 266
                      67999******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.551216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.83E-10222270No hitNo description
SuperFamilySSF474592.22E-13222286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-10222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12223275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6224266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MQPSSRDTAG AGAGDGGAQD DFFDQMLSTL PSAWADLGGG GAAGKSPWEI AAAGGEVDPS  60
AAQVFDESAL LASRLRQHQI GGGGVGGEKP VMLQLSDLHR QASGGGEEDG GGGAFSPLPL  120
FTDRTNVPPR EEIDGGGGGG FKSPNATGGG DHAMFNGFGV QPPFGQGGSM SGQSFGGGGT  180
AASGGTAPVS EEGRRRRGSS GCARGEGKPP THTASPNTRL LTMTESLRRE RIAERMKSLQ  240
ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA AGMAPLVASM SSEGNSNGSG  300
NGGGGKASKV NNGGEGGGGG SGGGMRVTEQ QVAKMMEEDM GTAMQYLQGK GLCLMPISLA  360
SAISSATSSA SLLSRPAIRH TAPPQMLDAA AAVAGCGGPA SPAGMSNGNA AAAAGVGDDA  420
RHAQDGGAGG GTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642979.11e-150PREDICTED: transcription factor bHLH66-like
TrEMBLA0A0D9WMM60.0A0A0D9WMM6_9ORYZ; Uncharacterized protein
STRINGBGIOSGA021777-PA1e-149(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-45LJRHL1-like 3